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¡¡¡¡Xun W, Xiong W, Ren Y, Yan R, Lin D, Li W, Miao Y, Zhang G, Cui Z, Xin X* and Zhang R* 2018. Grazing drives soil productivity by regulating soil microbial community and organic carbon turnover in meadow steppes. Microbiome£¨Accepted£©(IF5="11.0)

¡¡¡¡Zhang R, Vivanco MJ, and Shen Q*, 2017. The unseen rhizosphere root-soil-microbe interactions for crop production. Current Opinion in Microbiology 37:8-14.

¡¡¡¡Xun W, Zhao J, Xue C, Zhang G, Ran W, Wang B, Shen Q and Zhang R* 2016. Significant alteration of soil bacterial communities and organic carbon decomposition by different long-term fertilization management conditions of extremely low-productivity arable soil in South China. Environmental Microbiology 18:1907-1917.

¡¡¡¡Miao Y, Li P, Li G, Liu D, Druzhinina IS, Kubicek CP, Shen Q and Zhang R*. 2017 Two degradation strategies for overcoming the recalcitrance of natural lignocellulosic xylan by polysaccharides-binding GH10 and GH11 xylanases of filamentous fungi Environmental Microbiology 19:1054-1064.

¡¡¡¡Xun W, Huang T, Zhao J, Ran W, Wang B, Shen Q and Zhang R* 2015. Environmental conditions rather than microbial inoculum composition determine the bacterial community, microbial biomass and enzyme activity of reconstructed soil microbial communities. Soil Biology & Biochemistry 90:10-18.

¡¡¡¡Sun L?, Xun W?, Huang T, Zhang G, Gao J, Ran W, Li D, Shen Q and Zhang R* 2016. Alteration of the soil bacterial community during the parent materials maturation driven by different fertilizations Soil Biology & Biochemistry 96:207-215.

¡¡¡¡Feng H, Zhang N, Du W, Zhang H, Liu Y, Fu X, Shao J, Zhang G, Shen Q and Zhang R* 2018. Identification of chemotaxis compounds in root exudates and their sensing chemoreceptors in plant growth-promoting rhizobacteria Bacillus amyloliquefaciens SQR9. Molecular Plant-Microbe Interactions (Published online, doi: 10.1094/MPMI-01-18-0003-R)

¡¡¡¡Wu G?, Liu Y?, Xu Y, Zhang G, Shen Q and Zhang R* 2018. Exploring elicitors of beneficial rhizobacterium Bacillus amyloliquefaciens SQR9 to induce plant systemic resistance and their interactions with the signaling pathways Molecular Plant-Microbe Interactions 31(5):560-567.

¡¡¡¡Chen L?, Liu Y?, Wu G, Zhang N, Shen Q and Zhang R* 2017. Beneficial rhizobacterium Bacillus amyloliquefaciens SQR9 induces plant salt tolerance through spermidine production. Molecular Plant-Microbe Interactions 30:423-432.

¡¡¡¡Liu Y, Chen L, Feng H, Xu Y, Li Z, Wu G, Zhang N, Zhang G, Shen Q and Zhang R* 2017. Identification of root secreted compounds involved in the communication between soil-borne pathogen-cucumber-Bacillus amyloliquefaciens SQR9. Molecular Plant-Microbe Interactions 30:53-62.

¡¡¡¡Liu Y, Chen L, Zhang N, Li Z, Zhang G, Xu Y, Shen Q and Zhang R* 2016. Plant-microbe communication enhances auxin biosynthesis by a root-associated plant beneficial bacterium Bacillus amyloliquefaciens SQR9. Molecular Plant-Microbe Interactions 29:324-330.

¡¡¡¡Badri DV?£¬Chaparro JM?£¬Zhang R* , Shen Q£¬Vivanco JM*. 2013. Application of natural blends of phytochemicals derived from the root exudates of Arabidopsis to the soil reveal that phenolic related compounds predominantly modulate the soil microbiome. Journal of Biological Chemistry 288:4502-4512 (Co-corresponding author).

¡¡¡¡Qiu M, Xu Z, Li X, Li Q, Zhang N, Shen Q and Zhang R* 2014. Comparative proteomics analysis of Bacillus amyloliquefaciens SQR9 revealed the key proteins involved in in situ root colonization. Journal of Proteome Research 13:5581-5591.

¡¡¡¡Zhou X, Zhang N, Xia L, Li Q, Shao J, Shen Q and Zhang R* 2018. ResDE two-component regulatory system mediates oxygen limitation-induced biofilm formation of Bacillus Applied and Environmental Microbiology 84(8):e02744-17

¡¡¡¡Xu Z?, Zhang R?, Wang D, Qiu M, Feng H, Zhang N and Shen Q*. 2014. Enhanced control of cucumber wilt disease by Bacillus amyloliquefaciens SQR9 by altering the regulation of its DegU phosphorylation. Applied and Environmental Microbiology 80:2941-2950. (Co-First author)

¡¡¡¡Xu Z, Shao J, Li B, Yan X, Shen Q and Zhang R*. 2013. Contribution of Bacillomycin D in Bacillus amyloliquefaciens SQR9 to antifungal activity and biofilm formation Applied and Environmental Microbiology 79:808-815.

¡¡¡¡Zhang N?, Yang D?, Wang D, Miao Y, Shao J, Zhou X, Xu Z, Li Q, Feng H, Li S, Shen Q* and Zhang R* 2015. Whole transcriptomic analysis of the plant beneficial rhizobacterium Bacillus amyloliquefaciens SQR9 during enhanced biofilm formation regulated by maize root exudates. BMC Genomics 16:685

¡¡¡¡Miao Y, Liu D, Li G, Li P, Xu Y, Shen Q and Zhang R*. 2015 Genome wide transcriptomic analysis of a superior biomass degrading strain of Aspergillus fumigatus revealed the active lignocelluloses degrading genes. BMC Genomics 16:459.

¡¡¡¡Shao J, Li S, Zhang N, Cui X, Zhou X, Zhang G, Shen Q and Zhang R* 2015. Analysis and cloning of the synthetic pathway of the phytohormone indole-3-acetic acid in the plant-beneficial Bacillus amyloliquefaciens SQR9 Microbial Cell Factories 14:130.

¡¡¡¡Sun L, Gao J, Huang T, Kendall JR, Shen Q and Zhang R* 2015. Parental material and cultivation determine soil bacterial community structure and fertility. FEMS Microbiology Ecology 91:1-10.

¡¡¡¡Xun W, Li W, Huang T, Ren Y, Xiong W, Miao Y, Ran W, Li D, Shen Q and Zhang R* 2018. Long-term agronomic practices alter the composition of asymbiotic diazotrophic bacterial community and their nitrogen fixation genes in an acidic red soil. Biology and Fertility of Soils  54(3):329-339

¡¡¡¡Qiu M, Li S, Zhou X, Cui X, Vivanco JM*, Shen Q and Zhang R* 2014. De-coupling root-microbiome association followed by antagonist inoculation improves rhizosphere soil suppressiveness. Biology and Fertility of Soils 50:217-224.

¡¡¡¡Shao J, Xu Z, Zhang N, Shen Q and Zhang R* 2015. Contribution of indole-3-acetic acid in the plant growth promotion by the rhizospheric strain Bacillus amyloliquefaciens SQR9. Biology and Fertility of Soils 51(3):321-330.

¡¡¡¡Weng J?, Wang Y?, Li J, Shen Q and Zhang R*. 2013. Enhancing root colonization and biocontrol activity of Bacillus amyloliquefaciens SQR9 by abrB gene disruption Applied Microbiology & Biotechnology 97:8823-8830.

¡¡¡¡Li S?, Zhang R?, Wang Y, Zhang N, Qiu M, Shen B, Yin X, Shen Q*. 2013. Promoter analysis and transcription regulation of fus gene cluster responsible for fusaricidin synthesis of Paenibacillus polymyxa SQR-21 Applied Microbiology & Biotechnology 97:9479-9489.

¡¡¡¡Zhang N, Wang D, Liu Y, Li S, Shen Q and Zhang R* 2014. Effects of different plant root exudates and their organic acid components on chemotaxis, biofilm formation and colonization by beneficial rhizosphere-associated bacterial strains Plant Soil 374:689-700.

¡¡¡¡Xun W, Huang T, Li W, Ren Y, Xiong W, Ran W, Li D, Shen Q and Zhang R* 2017. Alteration of soil bacterial interaction networks driven by different long-term fertilization management practices in the red soil of South China. Applied Soil Ecology 120:128-134.

¡¡¡¡Xun W, Xiong W, Huang T, Ran W, Li D, Shen Q, Li Q and Zhang R* 2016. Swine manure and quicklime have different impacts on chemical properties and composition of bacterial communities of an acidic soil. Applied Soil Ecology 100:38-44.

¡¡¡¡Chen L, Xun W, Sun L, Zhang N, Shen Q and Zhang R*. 2014. Effect of different long-term fertilization regimes on soil viral community in a red soil of southern China. European Journal of Soil Biology 62:121-126.

¡¡¡¡Zhang N?, Yang D?, Kendall JR, Miao Y, Zhang G, Druzhinina, IS, Kubicek CP, Shen Q and Zhang R* 2016. Comparative genomic analysis of Bacillus amyloliquefaciens and Bacillus subtilis reveals evolutional traits for adaptation to plant-associated habitats. Frontiers in Microbiology 7:2039.

¡¡¡¡Liu Y?, Yang D?, Zhang N, Chen L, Cui Z, Shen Q, Zhang R* 2016. Characterization of uncultured genome fragment from soil metagenomic library exposed rare mismatch of internal tetranucleotide frequency. Frontiers in Microbiology 7:2081.

¡¡¡¡Li B, Li Q, Xu Z, Zhang N, Shen Q and Zhang R* 2014. Responses of beneficial Bacillus amyloliquefaciens SQR9 to different soilborne fungal pathogens through the alteration of antifungal compounds production Frontiers in Microbiology 5:636

¡¡¡¡Zhao J?, Zhang R?, Xue C, Xun W, Sun L and Shen Q*. 2014. Pyrosequencing reveals contrasting soil bacterial diversity and community structure in two main winter wheat growing areas of China. Microbial Ecology 67:443-453 (Co-First author).

¡¡¡¡Zhao J, Ni T, Li Y, Xiong W, Ran W, Shen B, Shen Q and Zhang R*. 2014. Responses of bacterial communities in arable soils under a rice-wheat cropping system to different fertilizer regimes and sampling time Plos One 9: e85301.

¡¡¡¡Liu Y, Zhang N, Qiu M, Feng H, Vivanco JM, Shen Q and Zhang R*. 2014. Enhanced rhizosphere colonization of beneficial Bacillus amyloliquefaciens SQR9 by pathogen infection FEMS Microbiology Letters 353:49-56.

¡¡¡¡Miao Y, Li J, Xiao Z, Shen Q and Zhang R* 2015. Characterization and identification of thermostable xylanolytic enzymes from Aspergillus fumigatus Z5. BMC Microbiology 15:126.

¡¡¡¡Xun W, Xu Z, Li W, Ren Y, Huang T, Ran W, Wang B, Shen Q and Zhang R* 2016. Long-term organic-inorganic fertilization ensures great soil productivity and bacterial diversity after natural-to-agricultural ecosystem conversion Journal of Microbiology 54:611-617.

¡¡¡¡Njeri KV, Chen L, Liu Y, Raza W, Zhang N, Mungai LK, Shen Q and Zhang R* 2016. Characterization of extracellular polymeric substances of Bacillus amyloliquefaciens SQR9 induced by root exudates of cucumber. Journal of Basic Microbiology 56:1183¨C1193.

¡¡¡¡Zhang R, Xu C, Shen Q, Kusuga T, Wu W, Szewczyk E,Ma D and Fan Z*. 2013. Characterization of two cellobiose dehydrogenases and comparision of their contributions to total activity in Neurospora crassa. International Biodeterioration & Biodegradation 82:24-32.


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